rs46100661 SNP Detail

Summary

• ID
  rs46100661
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132458793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCG CCTGTAACTC CAAGGGATCC
  G
  ACACCTTCTT CTCTTGGGGC CTGCC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147477606	ENSMUSSNP310423	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321335959	CHEV_4_132287397	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46100661					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132458793 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398540	regulatory region 398540			1075 bp upstream
Rr601049	regulatory region 601049			952 bp proximal
Rr601050	regulatory region 601050			1037 bp proximal
Rr601051	regulatory region 601051			1054 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B			1484 bp downstream
Tssr39417	transcription start site region 39417			344 bp upstream
Tssr43695	transcription start site region 43695			228 bp downstream
Tssr43696	transcription start site region 43696			945 bp downstream
Tssr43697	transcription start site region 43697			1032 bp downstream
Tssr43698	transcription start site region 43698			1083 bp downstream
Xkr8	X-linked Kx blood group related 8			Intron
				Noncoding-Transcript-Variant