rs46099090 SNP Detail

Summary

• ID
  rs46099090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17674465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAAGAA CTGTCTTCTA
  GTAATGTCAG ATGCTTCAGC CATAAAGTCT CACCAGCATG ACTGCCTAAA CACTAGCCAA
  GCAAGAACAA CAATAGCAGA CATGCTAAGG TAGCGGGAAG AGACCACATG ACATCAGTCC
  TACATGAAGA ACCAGTAATG AATGCTGAGA GTGTAAGAGT CTTCCCCAGG GAAGAGCACA
  Y
  TGATTTAGCA ATCTAAAACC AAGTGGTCAG ATTTGAAAAC ATACATTCAA GTATCATTAC
  ATAGACTGAA CAAGTTATAC TTTAGGCTAC ATATGTATAT GCTTATACAT ATATACATTA
  ATGAAAACGG GGTGTTAATT TGAAATAGCA AGAAGGAGGA GAGGGAAGGA AGAAATGATG
  GAATCATTTT ATAATCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133020140	ENSMUSSNP1940964	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46099090					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17674465 () rs orientation: forward

Symbol	Name	Function Class
Rr399579	regulatory region 399579	982 bp upstream
Rr626829	regulatory region 626829	825 bp proximal
Rr626830	regulatory region 626830	1108 bp proximal