rs46096201 SNP Detail

Summary

• ID
  rs46096201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTTAAGA GCACTGGCTG
  CTCTTTCAGA GGACCCTGGT TCAATTCCCA GCACCCACAT GGCAGCTCAC AATTGGTACA
  GGGACCATTC TACCTCTGGT CCACCTACAA GGTGCAGGTC CTTCAGGAAT CCTAACACAG
  GGATAAACAG GACTGCAGGA AGCCCAGTGC CCTGGGATAG ATGCGCTTAT CAGTATCTTC
  Y
  TCTCTGTGAC ATATAGGCCA TGCAGACTGG ATACCACTAC CTGTTCCTGT GGGTAGGGTG
  TCCTCACTGA ACCCCAAAGA GGCACAGACC TGTCTGGCAC AGAGATAATC ACAATCTTCC
  TCCACACCCC CTCTACCTCC TTTACCTTGC CCTTCAGGCT GTAAGTAGTA AGTGGCCCGA
  GGGTGTAGAT AACCAACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376039	NES15271656	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46096201					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376039	NES15271656	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	1086 bp proximal
Gm3137	predicted gene, 3137	1805 bp upstream
Rr434375	regulatory region 434375	1315 bp distal
Rr434376	regulatory region 434376	814 bp proximal
Rr434377	regulatory region 434377	1273 bp proximal
Rr434378	regulatory region 434378	1342 bp proximal
Rr434379	regulatory region 434379	1616 bp proximal
Rr434380	regulatory region 434380	1763 bp proximal
Rr434381	regulatory region 434381	1899 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	889 bp upstream
Tssr94203	transcription start site region 94203	850 bp upstream
Tssr94204	transcription start site region 94204	878 bp upstream
Tssr94205	transcription start site region 94205	1331 bp upstream
Tssr94206	transcription start site region 94206	1860 bp upstream
Tssr94207	transcription start site region 94207	1880 bp upstream
Tssr94208	transcription start site region 94208	1910 bp upstream
Tssr94209	transcription start site region 94209	1924 bp upstream
Tssr98215	transcription start site region 98215	1826 bp upstream