rs46090340 SNP Detail

Summary

• ID
  rs46090340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116763216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGACCCC ATTCAAAAAA
  AACAAAAAAC AAAAAACAAA AAACAAAACA AAACAAAACA AAAAAACAAA CCCCGACAAT
  CTTCAATTTC AGGAAGGTGC CCATTTTGAC AGCCTGAAGT TATGCAAGAG CAAGGAGCGA
  GCCTGTGAAA GTGTGCCCTG GGTGGACAGT CCCTGCCCTT TAAGGAAGGC AGTGAACCCC
  R
  GGGAAACTCA GGTCAGAGCA GAGCCCAGGA AGCTTTGCAA TGGACTTTGT TTTCTTTTTC
  CCACCTATTC TTTAAGTGCA TGTTGATGTG GTGAGCCCCA ATTACCATCC ACCACATTAT
  TATGTGTTTG GATCAGCCCT TTAATATCAC CATTCAGGCA GGGAGGTTAA ATAGACAAGG
  CTGACACTGA ACACACTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135676654	ENSMUSSNP3605363	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46090340					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116763216 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Cpgi13743	CpG island 13743	697 bp distal
Gm52613	predicted gene, 52613	1554 bp downstream
Palmd	palmdelphin	580 bp upstream
Rr583817	regulatory region 583817	1290 bp distal
Rr583818	regulatory region 583818	249 bp distal
Tssr35360	transcription start site region 35360	1016 bp upstream
Tssr35361	transcription start site region 35361	999 bp upstream
Tssr35362	transcription start site region 35362	934 bp upstream
Tssr35363	transcription start site region 35363	875 bp upstream
Tssr35364	transcription start site region 35364	799 bp upstream
Tssr35365	transcription start site region 35365	778 bp upstream
Tssr35366	transcription start site region 35366	752 bp upstream
Tssr35367	transcription start site region 35367	733 bp upstream
Tssr35368	transcription start site region 35368	629 bp upstream
Tssr35369	transcription start site region 35369	563 bp upstream
Tssr35370	transcription start site region 35370	540 bp upstream
Tssr35371	transcription start site region 35371	44 bp upstream