rs46090323 SNP Detail

Summary

• ID
  rs46090323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129085378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTTTTTTT AAAACTTACA TTATGTGAGC AAGTATTTCA
  CCTCGGTTAT CAGGTACATA CATAAGTATA AAAAAGACCA GGGGATTTCT GCCAGGCATG
  R
  TGATGCACAC CTATACTCCC AGCTTTTGGG AAACAGAGAT AGGCAGATCT CCATGGGTCT
  TAGCCAGCCT GATCTACATA GGTCAACTAG GGCTATGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147584256	ENSMUSSNP841467	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46090323					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129085378 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	405 bp downstream
Rr564887	regulatory region 564887	1527 bp distal
Rr564888	regulatory region 564888	607 bp distal
Rr564889	regulatory region 564889	within coordinates
Rr564890	regulatory region 564890	291 bp proximal
Rr564891	regulatory region 564891	1180 bp proximal
Rr564892	regulatory region 564892	1195 bp proximal