rs46088940 SNP Detail

Summary

• ID
  rs46088940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41333087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTCCC AGAGCTGGTG
  AGCAGCTGCA TCGGGGCTAT TAGATAATGC CTGTCTATAT TGTGAGAGGT TAAACGTTCT
  AGAAACCAGC TTGCAGCCTC CTCGTGTCTT GGCTTGGACT CTTCAAAGAG ACTGAAAAAA
  AATATTCTAC AACCCCTGCC TTGCTTTGCA GAAGCCATGT AGGACTCCCA GGAGCCTAAC
  Y
  AATGCAATGC TGCCATGCAG CCGGGGAAGG GGGACGTAGG AGACATTTGA AGCACTCTGA
  GTCACTCGAT AGCCTAGCTT CATGGCTTCT GTCACCCCTC TAGAGAGCTG TTAGATTGGT
  GAGGTCACCG TGAGAGTCCT AGTAGCTAGT TAGGTGATAG CAGGCTTAAA GGTCAGGGAG
  ACTGGGACCT CCCTGGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398357	NES15902914	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46088940					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398357	NES15902914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41333087 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	1641 bp upstream
Rr575940	regulatory region 575940	1674 bp distal
Rr575941	regulatory region 575941	1755 bp distal
Rr575942	regulatory region 575942	1157 bp distal
Rr575943	regulatory region 575943	within coordinates