rs46087458 SNP Detail

Summary

• ID
  rs46087458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142146444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACCTCTCA GATATTTGTG
  GTTCCTCTTA AGTGTGCCCT ATGGTTTTTT TTTCTCCAGT TGGCATTCAC TGCTCTTTTA
  TTTAGAAAAT AGTTTTAGAT TCATTAAGCC TGTACTATAT ATGGTTAAAG CATTCCTTTG
  CAAATTTCCA AATTACAGCA GGCATTTTGG TTACGGTCTG GAATCATTGT TAGAGCTGAG
  Y
  GAGCCTCATG GAACAAGCTG CTCTCTCTTT CATGGGACCA CAGCTAGTCA CCTGTTCTCT
  CCTTCAGGCT TCACCATGGA GAATAAAAGA CATATGTCAT ATGTATGTAA AGATATATTT
  AGAATGAGCT CTGAGGTATG TTGATATAGT AAAATATTAG TCTCTACCTC CAAACAACAG
  CATATTCACA TATTAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61087298	NES16608299	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46087458					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087298	NES16608299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142146444 () rs orientation: forward

Symbol	Name	Function Class
Gm33189	predicted gene, 33189	1787 bp downstream
Gm64781	predicted gene, 64781	1286 bp downstream
Rr586432	regulatory region 586432	within coordinates
Rr586433	regulatory region 586433	1534 bp proximal