rs46084899 SNP Detail

Summary

• ID
  rs46084899
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148913427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGAGGGG TGAGGGGTGA
  GGGGGATGTG TGTGCCTGGG AGAACTCAGG CCAGCATCAC TGTGTTGGCC TTCTAGACAC
  GGGGCATGTG GGTTTTTCTT TCTCTGCTTA CCATGAGTTC CTCGTCAGGG GCTCCGGTAA
  ATTCTTTACA TCCTTTTGCT CTTAGAGAAA GGGATTTCCC CTTAGGGTGT CTTTTTATTT
  W
  AAAAAAAATT ACTTATTTTT ATTTTATGCG TGTTACTATT TTATCTGCAT GTATGTCTTA
  TGTAAGAGTG TCAGTTTCCC TGAAACTAGA GTTACAGAGA GCTGTGAGCT ACCCTATGGT
  TGCTGGGAAT TGAACACAGG TCCTGCTCAG CCAGTGTTCT TAGCCACTGA GCCATCTCTC
  CAGCCCTGTT TAGGGTGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148020496	ENSMUSSNP90262	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321423182	CHEV_4_148203079	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46084899					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148913427 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Casz1	castor zinc finger 1			Intron
				Noncoding-Transcript-Variant
Rr377397	regulatory region 377397			912 bp upstream
Rr604769	regulatory region 604769			1406 bp proximal