rs46084397 SNP Detail

Summary

• ID
  rs46084397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132405537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCTCAC TCTTGAATTC
  TATATGCCTA CACAAGTTAC ACCATAGGAT GACAGTAAAT GTTGCTGCTG CTGAAGAGGT
  AGTCTGGCCC CTTTAGACCA TTGCTGTGCT CTGTGCACAT CTTAGAAAAT ACTTTGCTAG
  GCAATTGTTT TCTAGAAGTC AATCATGGAA GCTCTGTGTT TTCAGGTACT GTCCTTTTAC
  R
  TGAATGTTCT TTACATGGGT GTTGTGTTTT ATATCCCAGA TCTGTACGTG GGTGAGATCT
  TATTCTCAAG GAACCTTTCC AGTTTTCTCC ATGCAAAGTG TAAGGAAAGT GCATGGGATC
  TCATTAATGG GACTTTAACA ATTACAGCTG CTCTGTCCAT ACTCACCTTG TCTGTGGCTT
  TAACCTGGTT CACCTTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135913818	ENSMUSSNP7065433	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46084397					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132405537 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr585446	regulatory region 585446			1683 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant