rs46081086 SNP Detail

Summary

• ID
  rs46081086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116014719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCACACC TCAGACAGCA
  TCTTTAACTG CATTACACAT CTGCCTGGGG CAGGCTCACT GCTCTGAGCC ACTCCTGGCA
  CCTTGGCATT TGCTTTGATA ATCGAACACC CCTTCAGGGT GTGAGCAAAT GTCCTCTGTC
  TTTATGATAT TCTATTGCTC ATAGCTTTCT GGATACATCC ACATGCACAG ACCTCATATC
  R
  CCACCCTCTC TGAAGAGGCA TCAGGTTCAA AACTGACAAG ACTTGTATTG ATATGTAAAC
  ACCAGGTCGT GTTAGTGTGT CTGACTGATG GGGACTTGGC AGCTGAGACA GACCACTGCA
  TGAACTGTGT CATCACAACA GAAACCAGGC CAAGCCAAAA CCTAAAGCAG GATGCATTTG
  CCAAAAATAA GATGCATTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437891	NES15932708	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	A	G		A	A	G	A
ss135669515	ENSMUSSNP4859054	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46081086					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437891	NES15932708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116014719 () rs orientation: forward

Symbol	Name	Function Class
Rr583673	regulatory region 583673	within coordinates
Rr583674	regulatory region 583674	1441 bp proximal