rs46080827 SNP Detail

Summary

• ID
  rs46080827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:110502603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCATCAG GACTAGCAGC
  AACCCAGACA GGTTCTGCTC ATCAAAGACC ATCTTCATGC AGTGTATATC TTGGCGCAAG
  GTGAGCACGG AACAAGGACC CATGGACCCA TGGGGCAAGG TCCCTGGTGA GAGGAGGGGA
  AGAAAGACTT TCACTGGGGC TAAATGATAT CTGACCATCT CTCTCCAGCC CGAAGGAGCC
  R
  TATGCCAACA CCACCTTGAA TGCTGGGACC TGTGCTGCCT CCCACTGAGC GAGAACAGCC
  CTTCTTCCCA CTGCACAAAG CGCACCGGGC TCCTGGCTCT CTGCCTGCCA GTCGTGAGTA
  GCCCACCCCA ACCTCCACCT ACTGAAGCTG CCATAGGGGT GGGGTGAGGG TTATGTGTGA
  AACCAAATCC CACCAACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61218265	NES16714786	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46080827					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61218265	NES16714786	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110502603 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrcol1	leucine rich colipase-like 1			Coding-NonSynonymous
				Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr616873	regulatory region 616873			129 bp proximal
Rr616874	regulatory region 616874			189 bp proximal