rs46079971 SNP Detail

Summary

• ID
  rs46079971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121397088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTCTTGTC TGCCTCCTTG CTCGAATGCC CTCCTCAGAA
  AGTCAGGGAC TTCTACCTTG TTGACAGCCA TTTCCCCAAC CACAGCTTAG AATAAAGCAG
  R
  AATTCCTTCA TTTCTTTCTC TCTTTGGTGC ATCATAGTGA AGCCCAGGCT GGTTTTAAGG
  TTGTGCCCTT CCTGCCTCAG GCCCTACCAA GTGATGGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135724907	ENSMUSSNP4562620	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320904173	CHEV_3_121306357	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46079971					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121397088 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	1917 bp downstream
Rr584125	regulatory region 584125	838 bp distal
Rr584126	regulatory region 584126	1592 bp proximal