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rs46078617 SNP Detail
Summary
  • ID
    rs46078617
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:58994744 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CAAGGGGAGG CTCTCCTTTA ACTAACTGGA GGCCTAGTGA
    AAAGCTTTGG GCAGTGGTTC TCAACCTTCT TCGTGCTGCA GCCCTCTAAT ACAGTTCCTC
    R
    TGGGTTGAGA CCTACAGGTT GAGAACCATT GGCCTTGGGG ACAGCAAGTG TCGGAGAGAT
    TCAAGTGGTT TGAATGTTGG AAACAGGAAG ATGAGAAGGC                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60415402 NES15910899 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs46078617 SNP A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60415402 NES15910899 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:58994744 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Med12l mediator complex subunit 12-like Intron
Noncoding-Transcript-Variant
Rr577311 regulatory region 577311 677 bp proximal
Rr577312 regulatory region 577312 770 bp proximal
Rr577313 regulatory region 577313 828 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory