rs46077328 SNP Detail

Summary

• ID
  rs46077328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134639628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCTGAT TGTCTCGTTA
  ATCCTTTCTT CCTTTTTTTT TTTTTTTTTT TTTTTGTTGT TTTTTTTTGT TGTTTTTCGA
  GACTGGGTTT CTCTGTATAG CCCTGGCTGT CCTGGAACTC ACTTTGTAGA CCAAGCTGGC
  CTCGAACTCA GAAATCTGCC TGTCTCTGCC TCCAGAGTGC TTGGGATTAA AGGCGTGTTC
  Y
  ACCACTGCCT GGCATCTTTC TTCCTTTTTT GAAGACAGGG TCTCACTATC TGCTCTGGCT
  GTCCTGGAAC TCACTGTGTA GACCAGGTTG GCCTCAAACT CACAGAGATC CACCTGCCTT
  GGCCTCCTGA GAGCTGGGAT CGAAGGTACA CATCACACCT GGCCTTCTTC AACCCTTTAA
  GCCTTCTGCG CTTACCAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147538599	ENSMUSSNP5812216	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321349928	CHEV_4_134468232	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46077328					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134639628 () rs orientation: forward

Symbol	Name	Function Class
Rr601858	regulatory region 601858	832 bp proximal
Rr601859	regulatory region 601859	1330 bp proximal
Rr601860	regulatory region 601860	1851 bp proximal
Tmem50a	transmembrane protein 50A	Intron