rs46077247 SNP Detail

Summary

• ID
  rs46077247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153080604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCAGTTAC TGGTATAACT CAGTGTATTC TCAGCCCTGG
  AATCTTCTGG CATCTGATCT GAGGGGAGGC AGCAGGGAAA GAACCTTGGA CTTGCTATCA
  R
  AAGAGCCACC ACTCACTGGC TGTGAAACCA CAGGCAGGTT ACTTCATTTC TCTGAACCTC
  ACTCTTCTCA ATTTCTAAAC GAGATTCATT CTCTTAACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147988390	ENSMUSSNP6295967	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46077247					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153080604 () rs orientation: forward

Symbol	Name	Function Class
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Rr567587	regulatory region 567587	within coordinates
Rr567588	regulatory region 567588	272 bp proximal
Tssr26894	transcription start site region 26894	750 bp upstream