rs46065550 SNP Detail

Summary

• ID
  rs46065550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102709850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGAATC ACACTCCCAT
  ATTCATATGC ATATGCATAC GCTGACACTG CTCTATGCAA AGTTAAGAGC TATGTGGCAG
  CTTTCCTTAT TCTCTTTAGC ACTGGGGATT GAACCCCTAG GGCCTGGTCT GTGCCAGGCA
  GGTGCCCAAC CACTGAGCCA TGTCCTTAAT ACCCCTAGGC CTTATTTTTT CTTTACTTTT
  Y
  TTTTTTTTTA AATCTTTGAG ACAAGAAATC GCAAAGTTGC CCAAACTGAT CTTAAACTCA
  GTCTGTAGCA AAGAAGGGGC CCTGGATTAG AAATGCCCCA GCCTCTGGGG CGCTAGAGCA
  GTGTCCACTG TACCAGGTCT GGCTGAACCT TCCCTGATAC ATTCACTTGC TCTGCTGGTT
  GTTTTCTGAC CATTTGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147136032	ENSMUSSNP19506	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46065550					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102709850 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69082	predicted gene, 69082			within coordinates
Rr596317	regulatory region 596317			1855 bp distal
Rr596318	regulatory region 596318			540 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1			Intron
				Noncoding-Transcript-Variant