rs46058824 SNP Detail

Summary

• ID
  rs46058824
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTAAATTA GACTCAAGTA
  TATTATGCTT TGCCATTCGT AGCTCAGTGA TTTCATGCAA GTGACTTAAA ATCTGAATCT
  TTTTGATTCC AGAATTTATA GAAAACGCTA CCGATTGTAC GTCTTGACTA ATGGTTAAAC
  TTACTTTTAT GTGGGTATCA CCTTTGAAGC TGTACACCAT AGTGATTAGG ACTACCGTCT
  R
  TGGATCTGAT AATCATAGGC TCAAACCTCA GAGCTGTGCC CCTCACTTGT GTGACCTTAG
  ACTCTCAAGG ACTCCTTTTC CCTGTTTGTG GAATAGAGAC ACTCGGGTCC TGCCTGTATG
  CTCTTGGGGA GTATCTTGTG CTGCCCCACC ATCATGAACT CAGATCAGGA TTTCCCAGTA
  GCCTGTGTGT GCAGTTGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147115204	ENSMUSSNP7163932	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320438729	CHEV_2_102389250	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46058824					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	673 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	919 bp upstream
Rr561703	regulatory region 561703	538 bp proximal
Rr561704	regulatory region 561704	1810 bp proximal
Tssr19094	transcription start site region 19094	952 bp upstream
Tssr19095	transcription start site region 19095	1006 bp upstream
Tssr19096	transcription start site region 19096	1024 bp upstream
Tssr19097	transcription start site region 19097	1045 bp upstream