rs46049790 SNP Detail

Summary

• ID
  rs46049790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGCTGCT TCCAGTGTTC
  CAAGTTATCC TTGGCGGATG GCTGCTCTTG CTTTTCCCTC TCTTGCCCAG CAGGGCGTGC
  GCTTGATTGG AGGAGGGACG CACCAGTGAG CGCTGGAATA GCTTGTAGGT CTCTGTGGAA
  ACCGCATCTG TGTTGCAAGG TGCTGTGTTG GAGTTCCCCG ACTTTTCGAA AGAAATTCAT
  R
  AGTACTTAGG AGCAAAATGA TAGGATCTTC GAGGTACGCT TTAAAGTTTT CTAGTCGAAT
  TGAAGGCATT TCGGTTCAGT CAGCCTCCAG AAAATGCAGG AAGCACCATC GACTTACTGT
  CTTCTCCTTG CAGAGCTGCA ACACGGATGG ATGAATGAAT TAGCTACCTG TGGCAACCAA
  AGAGCCTTAA AAGCTAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147477905	ENSMUSSNP4019586	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321336225	CHEV_4_132313263	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46049790					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	17 bp distal
Gm70165	predicted gene, 70165	854 bp upstream
Rr601063	regulatory region 601063	107 bp distal
Rr601064	regulatory region 601064	within coordinates
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	101 bp upstream
Tssr43702	transcription start site region 43702	241 bp upstream
Tssr43703	transcription start site region 43703	196 bp upstream
Tssr43704	transcription start site region 43704	161 bp upstream
Tssr43705	transcription start site region 43705	108 bp upstream
Tssr43706	transcription start site region 43706	89 bp upstream