rs46049029 SNP Detail

Summary

• ID
  rs46049029
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172342055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG TGGTCCCTAC CCCAACACCA
  W
  CAACCCTGCT TCTGAAGTTC TATGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011693	PARCsnp_1.19925	PARC_SEQ	INBRED	f	SNP			T	A
ss120014605	PARCsnp_1.09974	PARC_SEQ	INBRED	f	SNP			T	A
ss146194048	ENSMUSSNP2011847	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320125803	CHEV_1_174444619	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46049029					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172342055 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	within coordinates
Gm57108	predicted gene, 57108	474 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	1251 bp downstream
Rr396591	regulatory region 396591	154 bp downstream
Rr423601	regulatory region 423601	1286 bp distal
Rr423602	regulatory region 423602	1453 bp distal
Rr423603	regulatory region 423603	485 bp distal
Rr423604	regulatory region 423604	350 bp distal
Rr423605	regulatory region 423605	within coordinates
Rr423606	regulatory region 423606	420 bp proximal
Tssr302	transcription start site region 302	476 bp upstream
Tssr10235	transcription start site region 10235	1231 bp downstream
Tssr10236	transcription start site region 10236	341 bp downstream
Tssr15228	transcription start site region 15228	508 bp upstream