rs46048314 SNP Detail

Summary

• ID
  rs46048314
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121888497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAATTTGTC ACTTTCTCTG TCACTCAATT AGACATCATT
  TTTAAACACG GGTGCTTCCT TCTACATACT AACTTTGCCA TCATTACCTG GGCATGTGTG
  W
  ATTCCAGCCA GAGGGATTTA AGGTGTGTGC TAAGGGCTGA GTCACACCAC AACTAGAAAC
  AATTTTTTTT TTCAGTAAAT AATACAATTT CAGAGCCCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135734830	ENSMUSSNP1243411	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320908294	CHEV_3_121797766	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46048314					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121888497 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Rr584229	regulatory region 584229			285 bp proximal
Rr584230	regulatory region 584230			2000 bp proximal