rs46046714 SNP Detail

Summary

• ID
  rs46046714
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94261143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAC TTTTGGAACA CAGAGAATTT
  C
  GCTTTGGTGT TTGCAAATCG TTTCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133399246	ENSMUSSNP1143085	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46046714					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94261143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	within coordinates
Gm31661	predicted gene, 31661	within coordinates
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	245 bp upstream
Rr634854	regulatory region 634854	1694 bp distal
Rr634855	regulatory region 634855	1163 bp distal
Rr634856	regulatory region 634856	350 bp distal
Rr634857	regulatory region 634857	132 bp distal
Rr634858	regulatory region 634858	within coordinates
Rr634859	regulatory region 634859	416 bp proximal
Tssr62172	transcription start site region 62172	621 bp upstream
Tssr62173	transcription start site region 62173	560 bp upstream
Tssr62174	transcription start site region 62174	371 bp upstream
Tssr62175	transcription start site region 62175	342 bp upstream
Tssr62176	transcription start site region 62176	316 bp upstream
Tssr62177	transcription start site region 62177	226 bp upstream