rs46042425 SNP Detail

Summary

• ID
  rs46042425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:102755048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATCTTTAT GCGTGCGTAC GTTCCTGTAA TGGTGTGGTA
  TGGATGTCAG AGGACTTTTG GAAGCTGCTT CTCTGCTTCT ACCATACGTA AGCTCAGAGA
  Y
  TGATCTCAGG TAGCCAGGCT TGGCAGCAAG TGCCGTAAGA ACTAACCTAC TTGACAGCCC
  CACAGTGAGA TCTCATCTCA GTAAAAACAA AAAACAAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132739422	ENSMUSSNP6523863	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46042425					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102755048 () rs orientation: forward

Symbol	Name	Function Class
Eftud2	elongation factor Tu GTP binding domain containing 2	Intron
Gm74253	predicted gene, 74253	1301 bp upstream
Rr457439	regulatory region 457439	100 bp proximal
Rr457440	regulatory region 457440	250 bp proximal
Tssr111106	transcription start site region 111106	1529 bp upstream