rs46040403 SNP Detail

Summary

• ID
  rs46040403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGC CACCACCTCC CTTCCCCTGA
  R
  AGCCAGTCTG GTTTTGAAGT CTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147620281	ENSMUSSNP629797	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321367538	CHEV_4_137353045	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46040403					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524441 () rs orientation: forward

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	746 bp upstream
Cpgi15139	CpG island 15139	428 bp distal
Rr602724	regulatory region 602724	757 bp distal
Rr602725	regulatory region 602725	801 bp distal
Rr602726	regulatory region 602726	256 bp distal
Rr602727	regulatory region 602727	666 bp distal
Tssr1350	transcription start site region 1350	834 bp upstream
Tssr44149	transcription start site region 44149	805 bp upstream
Tssr44150	transcription start site region 44150	769 bp upstream