rs46040355 SNP Detail

Summary

• ID
  rs46040355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59852280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATCTAA CTATCCCTAG
  GCCTAGAAGC TTCTAGCCTC TATACAATCT AAACTTCTGC AAGCCTGGAC CTTGAAGGCT
  TCCCCTTCCA GCCTCTGTCT GCTATCGTAG GCCTAGAATG TTTCAGCCTC TGAGACTTAC
  ACTGAATAAA CTCACCCTTT CTAGCTCTTT CTGAACTCTG GATGGCTGGT CAACTCAGCT
  R
  TTCTGACTCA AACTCCTCTC CAAGCTGACT GATTCAAAGG CTTCTCTTGA CTTCTGACTG
  AATTGCTCTG CTTGAAAAGA CTTGCCTCTG AACTCCATGT GCTGAATTCA ACTGCACTCA
  ACTGAACTTC TGTACTTTCC TCTCTCCCTC ACTACTTTTA AGTAGCATCT CTTTCTTGTC
  TGTTCTTGTG TGAGTTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146403664	ENSMUSSNP3287077	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs46040355					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59852280 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	1107 bp downstream
Rr593160	regulatory region 593160	1585 bp distal
Rr593161	regulatory region 593161	1843 bp distal
Rr593162	regulatory region 593162	630 bp distal
Snx30	sorting nexin family member 30	Intron