rs46039360 SNP Detail

Summary

• ID
  rs46039360
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121089294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCAATCA TTTCCCCCAG
  GGGAGAAGAT GGGAGGCAAG TTATAGGTAA TCCCTGAAGT GCCCACTGCA GCGAGCTCAC
  CACATTCCTT CCTAATTCAT TCTAGAACCC GGGAAAGCAA AACAAAACAA AACGGTCTTT
  TCTCCTTTGA AAATATCTGA TGGGGAGGGA AGTACATCTT GTGTGCTTGT CTTTCTGTGT
  S
  CTTCTGTGTT ACTAAAAACT TATTCTTAGA ACAACAAAGG AGGGAGGGAT GAAAGAGCTT
  TCTGGGTGAA AGAGGCAAGG AGGATGTGGT GTAAGATGGC TGCAGGGAAT GGCTGGGCTG
  GACCAAGGAG CTGGTGAAAT AAAACTGAAA TGGTTACAGC TTATGAGGAG TTTGATATTT
  CACTGTTCTT TTGTGATAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135717714	ENSMUSSNP6105172	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46039360					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121089294 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Rr584041	regulatory region 584041			1348 bp distal
Rr584042	regulatory region 584042			1228 bp distal