rs46036658 SNP Detail

Summary

• ID
  rs46036658
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115974343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTATCC AGCCTCAACA
  TTTCCACATA CCCTCAAGTC TTAGGAGCTG AGACTCCTGC ATCAAAAGCT CTGGCTTCTT
  GGGGTTCGAT GAGAAGTCCA AGCTTTTTTG ATGGAGTTTT GTTTGGAAGT TGTGATTTCT
  CCATGGCCAC TACTGAGACC CAGGTGACCT TTTCTCATGA TTCCAAAGCA GCAGCCAAAA
  M
  CCAGCATTTT GAAACTGAAT CTGGGACAAA GGTTATAAAC CGGAGGCCTC ACAGTGTTCT
  CGACAACAAT GTCGGTTATA GTGAGGCTTA CAAGATCAGT GAAATGAAAG AAGTGCTATC
  CTGTAAAGGA TGTACCCAAG TTGGAACAGC CCTCATTCAG AAACTAAATG ACTACTTCCT
  AACTGGCCTG GCCTTTTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60438043	NES15933441	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		C	C	A	C		A
ss320894507	CHEV_3_115883612	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46036658					SNP	A	A	A	A	A	A	A	A	A	A	A	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60438043	NES15933441	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115974343 () rs orientation: forward

Symbol	Name	Function Class
Rr583660	regulatory region 583660	within coordinates