rs46035496 SNP Detail

Summary

• ID
  rs46035496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127966146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTGGTGGA AGCTCCCCTG ACTGCCTTGT TCCCTGGTGA
  TGCAAGAGCC TCCGCCTCCA GGCCGGCTTC CTAATTAGGA CCTAAAAAAG AGCACATAGC
  Y
  CAACCCGTTG CTTTCCCCAG TGCCTGTATA TTTTCTTTTA GCATGTCCAG GGTTGCAGAA
  TCGGAAGACT CCAGAGCAGC CTGCTCCTAC AAAGAAACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147552324	ENSMUSSNP5726595	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46035496					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127966146 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	1812 bp upstream
Cpgi12233	CpG island 12233	1009 bp distal
Cpgi12234	CpG island 12234	270 bp distal
Cpgi12235	CpG island 12235	802 bp proximal
Gm74510	predicted gene, 74510	1991 bp upstream
Gm75592	predicted gene, 75592	8 bp downstream
Rr564648	regulatory region 564648	within coordinates
Rr564649	regulatory region 564649	1607 bp distal
Rr564650	regulatory region 564650	923 bp distal
Rr564651	regulatory region 564651	1322 bp proximal
Rr564652	regulatory region 564652	1927 bp proximal
Tssr20042	transcription start site region 20042	1804 bp upstream