rs46029886 SNP Detail

Summary

• ID
  rs46029886
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69803307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAATCAGA TTCCATTATA GATGGTTGTA AGCGGTGCTG
  GGAATTGAAC TCAGGACCTC TTGAAGAACA GCCATCTCTC CAGCCCCTTT TGGTTTTTTT
  T
  TTTTTGTTTT TGTTTTTGTT TTTCTTAAAA CAGGATGTCA AGTAGTCCAA GCTGGCCTCA
  CATTCATGTT TGGTTTGTAT CTGAAGCCGG CCTTGAACA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss132362906	ENSMUSSNP3650750	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46029886					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69803307 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gps2	G protein pathway suppressor 2			1407 bp upstream
Neurl4	neuralized E3 ubiquitin protein ligase 4			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr402680	regulatory region 402680			1306 bp upstream
Rr450148	regulatory region 450148			917 bp proximal
Tssr102550	transcription start site region 102550			1133 bp downstream
Tssr102551	transcription start site region 102551			1121 bp downstream
Tssr102552	transcription start site region 102552			1527 bp upstream
Tssr102553	transcription start site region 102553			1671 bp upstream
Tssr102554	transcription start site region 102554			1698 bp upstream
Tssr102555	transcription start site region 102555			1755 bp upstream
Tssr102556	transcription start site region 102556			1805 bp upstream