rs46029819 SNP Detail

Summary

• ID
  rs46029819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135797855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGATATTT GCTCCAAATT
  TAGAGGTTGA GGCAGACAGT CTTCTGGCAC AAGAGTCTGC TCAGTTCAGA TTCACCACAG
  CCCAACAGTG AGGCCAGGCT CCTCCAGCCA GGTGCCTGGT TTCTCCCTCA CTCTCCATCT
  GGAATGTTCG CCCTTTCTGG AATCATAGCC TCTAAAACAT TTAGACTCCA TGTCTCCTCG
  Y
  CTCCCGTTGC ATTAAAAAAA CAGAGAAAAA AAGAAAAAGA TAACAAAGTA GAACTTATAG
  AACACACTTG CTTATTCTAA GCATGCAATT ACATGATTTT CAGTAAGTTT ACCAAGCTGG
  GCTCAAGATT TGGTTGACCA AAATCCTTTT ATTTCAGGCT GGGTGTGGTG GCACACACCG
  GGTAATCCTA GCACTGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147557413	ENSMUSSNP3685362	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46029819					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135797855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	261 bp distal
Cpgi15094	CpG island 15094	723 bp proximal
Rr367750	regulatory region 367750	941 bp upstream
Rr602257	regulatory region 602257	within coordinates
Rr602258	regulatory region 602258	411 bp distal
Rr602259	regulatory region 602259	209 bp proximal
Rr602260	regulatory region 602260	1143 bp proximal