rs46029069 SNP Detail

Summary

• ID
  rs46029069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAATTTAG AGACTAATTC
  ATATATATGC ATTGTTTCTC AAGGGCACTG GTCAGGTTCA ACCTTCTTTC TAGAAAGTTC
  TCATTATTCT CCTCCGTGGA TGGAGATATT ACTTTTCTCA CTAGCCCTGA AGAATCATCC
  ACGCCTCATA ACTTTGAGTT TTAATCTAAC ATCACAAACT AATATTGGCA CATCCCAAAG
  Y
  CCCAGGTCTA AATTAGACTC AAGTATATTA TGCTTTGCCA TTCGTAGCTC AGTGATTTCA
  TGCAAGTGAC TTAAAATCTG AATCTTTTTG ATTCCAGAAT TTATAGAAAA CGCTACCGAT
  TGTACGTCTT GACTAATGGT TAAACTTACT TTTATGTGGG TATCACCTTT GAAGCTGTAC
  ACCATAGTGA TTAGGACTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147115184	ENSMUSSNP933686	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320438725	CHEV_2_102389044	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46029069					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	879 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	1125 bp upstream
Rr561703	regulatory region 561703	744 bp proximal
Tssr19094	transcription start site region 19094	1158 bp upstream
Tssr19095	transcription start site region 19095	1212 bp upstream
Tssr19096	transcription start site region 19096	1230 bp upstream
Tssr19097	transcription start site region 19097	1251 bp upstream