rs46027666 SNP Detail

Summary

• ID
  rs46027666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134000939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA GGCCGGCTCC TTCCGCTGGA
  R
  AGATAAAGTT TTGCCGTGAG AGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147522860	ENSMUSSNP67138	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321346321	CHEV_4_133829543	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46027666					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134000939 () rs orientation: forward

Symbol	Name	Function Class
Gm69734	predicted gene, 69734	1 bp upstream
Pdik1l	PDLIM1 interacting kinase 1 like	1374 bp downstream
Rr398573	regulatory region 398573	within coordinates
Rr601619	regulatory region 601619	within coordinates
Rr601620	regulatory region 601620	149 bp distal
Rr601621	regulatory region 601621	12 bp proximal
Rr601622	regulatory region 601622	22 bp proximal