rs46024588 SNP Detail

Summary

• ID
  rs46024588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81667997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAACTAAGA GAGAAGGAGG TGGGGCATGG GGCAGGGAAA
  AGCAGACAGA TGGAAAGCTG CACTCAAGTA TGAAAGAAGA ATAAATTTAA AAAATTAAAA
  Y
  TTTGATTGGA AAAGACTGAC ATTTAAAGTA AGACATCGAT ATTGCCAGTA TGTAGGTTCA
  TACACAGAAC ATTCAGAGAA AATTACCAGA AAACTCTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135396871	ENSMUSSNP7240975	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320816597	CHEV_3_81564612	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46024588					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81667997 () rs orientation: forward

Symbol	Name	Function Class
Rr578714	regulatory region 578714	within coordinates