rs46021236 SNP Detail

Summary

• ID
  rs46021236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18298360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTTTTTC CTGATTACCC
  ATATTCAAGT TGTCTTGTAG ACTTAGTTGA TAAATATTTA CGCATCTAAT TAAATCCTAC
  TCCAAAACCT CTATCTTATG CACTGGACAG GATACAGTTC CCACCCTCAC CTATCCCCGA
  ACAGTTACTG CTAACAACTT CAAATCTGGT CTCTGTGCCA CTTACCATTT CACACAGATC
  Y
  GTTTTTACCC TGTCTCAGTC TCAGAAAGAA AGTGATGAAT ACTCCATGTG CAATGAGAAG
  TGTTAACACC AAAGGCTTGC GGAAGAGACC ACTGACCTGC ATAAAATAAA GCAAGCTGTT
  TTTATTTGTT TTCATGGGCT CCTTCCTCCT AAGGTTGGGA TCCAAGAGGT CAGCATTGGA
  CATATGGAAG ACAAGGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60376242	NES15872270	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46021236					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376242	NES15872270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18298360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12999	CpG island 12999	624 bp distal
Cyp7b1	cytochrome P450, family 7, subfamily b, polypeptide 1	858 bp upstream
Rr573891	regulatory region 573891	368 bp distal
Rr573892	regulatory region 573892	1076 bp proximal
Rr573893	regulatory region 573893	1167 bp proximal
Tssr836	transcription start site region 836	944 bp upstream
Tssr32683	transcription start site region 32683	920 bp upstream
Tssr32684	transcription start site region 32684	847 bp upstream