rs46017727 SNP Detail

Summary

• ID
  rs46017727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127151543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTGTGGTG ACCCCAAACA AAATTATTTT TATTGCTTAC
  TTCACATCTA ATTTTGCTAC TGTTATGAGT TGTAAATGTC TTTTGTTTTC CAAAAGTCTT
  Y
  GACAACCCCA AAAGGGGTCA AGATCCACAG TTGAGAATCA CTACTCTAAA TTCTGAGCAT
  TCATCAACCC ATTCTGATGC CTCCTACGAG GGCAGCAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147525480	ENSMUSSNP717991	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46017727					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127151543 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397283	regulatory region 397283	531 bp downstream
Rr397284	regulatory region 397284	1111 bp upstream
Rr564490	regulatory region 564490	543 bp distal
Rr564491	regulatory region 564491	755 bp distal
Rr564492	regulatory region 564492	712 bp proximal
Rr564493	regulatory region 564493	1753 bp proximal