rs46017219 SNP Detail

Summary

• ID
  rs46017219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33101591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTTTTA GATTGTCAGA
  TTTTCAGAAC TGGAGATCGT GTAAGAAAGA TGCAGCACTT GGCACACAAG ACATATCGCT
  TACTGCAGAT TCCAAACACA GCAATGACGG GGAAGTCTTT CAAGTGTCAG ATCTGCAACT
  GCGGGTTTAA CTGCTGCCTT GGATCTATGC TTTTCTCTAA GAAAAGCAAA TTCACCTGCC
  Y
  TTCAATGTCT AGTACAAGCA GGAAAATGAA GGGGCTTGTT ACAAAACTGG AGGGTTTTGG
  TTGTTTTTTA AAAAAAAATC TTTTCTCCAA ATGGCAGAAA ATTGGCACAA ACACCCATAA
  TTTCCATAAA GAAAGTGATG GCGTTGGAGG TAGAGGGATG GAGTGGCAAA AGGCAAGGCA
  GAAGCTGCAC TACTCAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60875860	NES15977719	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46017219					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60875860	NES15977719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33101591 () rs orientation: forward

Symbol	Name	Function Class
Rr628172	regulatory region 628172	1856 bp proximal