rs46006802 SNP Detail

Summary

• ID
  rs46006802
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94978915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGGCAG AGGCAGGCAT
  ATTTCTGAGT TTGAGGCCAG CCTCGTCTAC AAAGTGAGTT CCAGGACAGC CAGGGCTATA
  CAGAGAAACC CTGTCTCGGG AAAAAAAAAA GGAAAAGGCT TTGAGCTATG CAGGAAGACC
  CAGTCTCAAA ACATAGAGTG CCAACTTAGC CTTCACAAAG CTTAGGGTTC AATGCCATCA
  S
  CACTTAAATC CAGTGTGCTG GCACACAATT GTAAACCCAG CACTTGGGAG GCAGAAACTC
  AATGATCAGT AGTCCAAGGC CAGCACTGCA GACACTGTGT CAAAATCCAA AACCAGCAAC
  AAAAATCCTG TCTTGACTTT AACCTCTAAG TAAGAGCAAA CTCCCAATCA CTGGAGCCAG
  GTGGCAGCAC AGGGCTACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135509817	ENSMUSSNP4963774	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46006802					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94978915 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha			Intron
				Noncoding-Transcript-Variant
Rr580809	regulatory region 580809			1628 bp proximal