rs46005909 SNP Detail

Summary

• ID
  rs46005909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78500643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGAATATT GAATGATTTT TCCACAAGGA ATAAGTCCTT
  TCTCAGAAAA AGACTATTAT TTTTACGTAC CAAAAAGATA ATACTTAAAA GCTGGCTGTG
  R
  GTCATATATC TTGGAAGAGA ACCTGCAAGT GCCACTTTAC TAAACTACCA TAATCCCTAA
  CTATTTTCTA AATATTTGTC TTTATAACCA CAAATAAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135359151	ENSMUSSNP1271420	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320807524	CHEV_3_78397258	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46005909					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78500643 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	1181 bp proximal
Rr578424	regulatory region 578424	1600 bp proximal
Tssr33603	transcription start site region 33603	1003 bp downstream
Tssr33604	transcription start site region 33604	1073 bp downstream
Tssr33605	transcription start site region 33605	1086 bp downstream
Tssr33606	transcription start site region 33606	1101 bp downstream
Tssr33607	transcription start site region 33607	1177 bp downstream
Tssr33608	transcription start site region 33608	1235 bp downstream