rs46005326 SNP Detail

Summary

• ID
  rs46005326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143822678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGAACTTG CTTCCCTGGG GGATCTATTT ACATTCTGTT
  TGGAGGTAGA AAGGGACAGA GGGACAGAGA AGAAGTGGGA AGAGGGCAAG AAAATGGGGG
  Y
  TTGGGTTTTG AAGAACTCTT ACACAAAGGT GCTCAAAGCA CCTAGGGTTT TGTTCAGAGA
  TTCAAACCCT GACACACAGT TAGCGTCAAA GAACAAAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147776973	ENSMUSSNP1411482	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46005326					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143822678 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373991	regulatory region 373991			1209 bp upstream
Rr566349	regulatory region 566349			7 bp proximal
Rr566350	regulatory region 566350			214 bp proximal
Rr566351	regulatory region 566351			1434 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				Noncoding-Transcript-Variant