rs46001108 SNP Detail

Summary

• ID
  rs46001108
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87654813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT TTTACTCCCT TGGGTCACAC
  C
  GTCTTGATGT ATTGTTCTAT AAGGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135467903	ENSMUSSNP4621598	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320835310	CHEV_3_87551428	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46001108					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87654813 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	Intron
Pear1	platelet endothelial aggregation receptor 1	1591 bp downstream
Rr579535	regulatory region 579535	1107 bp proximal
Rr579536	regulatory region 579536	1488 bp proximal
Rr579537	regulatory region 579537	1696 bp proximal
Tssr33946	transcription start site region 33946	1027 bp downstream
Tssr33947	transcription start site region 33947	1050 bp downstream
Tssr33948	transcription start site region 33948	1071 bp downstream
Tssr33949	transcription start site region 33949	1093 bp downstream
Tssr33950	transcription start site region 33950	1113 bp downstream