rs45998870 SNP Detail

Summary

• ID
  rs45998870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57043109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC AGAGCCCTCT GTTGAGTGTT
  Y
  TGAACGACTG GATGACCTCA AATGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135198869	ENSMUSSNP7010458	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320779464	CHEV_3_56939610	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45998870					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57043109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13195	CpG island 13195	1132 bp proximal
Gm8177	predicted gene 8177	within coordinates
Gm64707	predicted gene, 64707	1389 bp upstream
Rr375016	regulatory region 375016	670 bp upstream
Rr577070	regulatory region 577070	1098 bp proximal
Rr577071	regulatory region 577071	1400 bp proximal