rs45997740 SNP Detail

Summary

• ID
  rs45997740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41522456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGACTT TTTCTTGTCT
  GCTAGCCTGT TGAACTGTCT CATTGATTAC CCATTTCCCA TTTAGCCCTG ATCACAAGGC
  CAGCTTTTTT GAAACCACTG GCCCTTGAAG GACCATTCAT TGCATGTGAC CTAACTTTTT
  GACGAAGCTC CTGAGAGTGA GCGGACGAAC CTAGGGCCGT GAAGTAAACT GAGTTAAGAT
  Y
  CTCAAATCAA ACGTCTTCAT TGTAATTTGG GAATCTTAGA TTTGGAAATG TTTGAAAAGG
  AAGTGTGGTT TTCTGGTGTA TGTGTTTTCA GATCACCTGG AGAAAGAGTT GTCTTAAGTT
  TCAGTTGTGA TGTGGCTGGG ATGTAGCCTG TGCAAAGGTC TCGGATGGGG ATTGCATCCT
  TGACAGGGCT GAGTGAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60397603	NES15899852	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45997740					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397603	NES15899852	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41522456 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13119	CpG island 13119			1614 bp distal
Jade1	jade family PHD finger 1			Intron
				Noncoding-Transcript-Variant
Rr575970	regulatory region 575970			1853 bp distal
Rr575973	regulatory region 575973			1352 bp distal
Rr575974	regulatory region 575974			1820 bp distal