rs45997299 SNP Detail

Summary

• ID
  rs45997299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137117155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG CTACACAGAG AAACAGGGGT
  R
  GGGGTATGAA TGGGAAAAGG GACTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147604070	ENSMUSSNP1415944	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss321363485	CHEV_4_136945759	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45997299					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137117155 () rs orientation: forward

Symbol	Name	Function Class
2810405F17Rik	RIKEN cDNA 2810405F17 gene	1116 bp upstream
Cpgi15128	CpG island 15128	1121 bp distal
Gm52681	predicted gene, 52681	within coordinates
Rr377264	regulatory region 377264	513 bp downstream
Rr602608	regulatory region 602608	1339 bp distal
Rr602609	regulatory region 602609	1127 bp distal
Rr602610	regulatory region 602610	626 bp distal
Rr602611	regulatory region 602611	1653 bp proximal
Tssr1346	transcription start site region 1346	1140 bp downstream
Tssr44122	transcription start site region 44122	1677 bp upstream
Tssr44123	transcription start site region 44123	1414 bp upstream