rs45985356 SNP Detail

Summary

• ID
  rs45985356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:140461141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTAAAAAA TTGTCTTAAT acaaacacac
  acacacacac acacacacac acacacacac acagagtcac acacacacac acCCTACTCA
  TTGTAATTCA GGAACAATTG ACAGTTAAAT AGAGGTATCT ATCTTTCTGA CTATTTATCT
  R
  TCTAAATATG GACATTTATA AATTCATATC ACATACCTTT GTGTTTCTAC GTTAGCTTGT
  TGTCTAAATT AATATAGCTG TTGCTTCTTT TATACTTTCA ACAAAGCAAC TTAGCAACTT
  AAACCAATTA TAATGTTTTG CCCTTGAAAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60810262	NES16487134	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A		A	G	A	A		A
ss320003525	CHEV_1_142429980	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45985356					SNP	A	A	A	A	G	A	A	A	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60810262	NES16487134	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:140461141 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt2	potassium channel, subfamily T, member 2			Intron
				Noncoding-Transcript-Variant
Rr419878	regulatory region 419878			1570 bp distal
Rr419879	regulatory region 419879			1667 bp distal
Rr419880	regulatory region 419880			1032 bp distal