rs45984495 SNP Detail

Summary

• ID
  rs45984495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41331988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGATCATCC CGTGCCACTT
  TGGAGTAGAT ATTTTCTTGG CCCAGTAGCC ATGGCAACTG ATTGAGCAGC ATATTACAGG
  GACAGCTAGG TCTATGGTAA TGGTAACAGA ACTACTGACA CTTCCTGGTA GAAGGAGGAG
  AGATTCTGGC CTTTCCTCTG TCCCCTCTCC TCTCAGCTAC AATTGATCTT GAGAGATCAG
  Y
  TAGTGAAAAA CTGAAAAGCA CTGCTTCATG ATGCTGCTTC TCTGAGGCCA TCATCCATGA
  AGGGCAGGAC TTTCTGGGAA TGAAGCTGGC TTTGGGTCAT CCATGATCCT AAAAGCAACT
  CTTCACACAT GCTAAGTTGG CTATGGATGC AATTGGTACC TTGGTTAATC TATCTGGGGT
  AATAGGTTCA TGTTTCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60398369	NES15902902	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45984495					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398369	NES15902902	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41331988 () rs orientation: forward

Symbol	Name	Function Class
Gm66268	predicted gene, 66268	542 bp upstream
Rr575939	regulatory region 575939	1709 bp distal
Rr575940	regulatory region 575940	575 bp distal
Rr575941	regulatory region 575941	656 bp distal
Rr575942	regulatory region 575942	58 bp distal
Rr575943	regulatory region 575943	263 bp proximal