rs45982442 SNP Detail

Summary

• ID
  rs45982442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56022695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTTTTG TTTTGTTTTT
  TGTTTGTTTT GTTTTGGGGT TTTTTGTTTG ATTGTTTTTT GTTCTTGGTT TTTTGGGACA
  GGGTTTCTCT GTATAGCCCT GGCTGTCCTG GAACTCACTC TGTAGACCAG GCTGGCCTCG
  AACTCAGAAA TCCGCCTGCC TCTGCCTCCC GAGTGCTGGG ATTAAAGGCG TGAGCCACCA
  Y
  GCCCAGCTCC CTGTGTGACT GTTGAGAAAC TCATGGTGGG ACTTCAACGA GACCCAGCCT
  CTCCCTGCCT CTAACAGCTT TCCCTCATTA AAAACAAAAA CAAAAATGAA AACAAAAACA
  AACAAACAAA CAAAAAACAG AGACAAGTTT TCAGAAAATT AGTCACAGAA ATTATGCCAA
  AATGATCTTG AAGGTTAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133220325	ENSMUSSNP6484222	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45982442					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56022695 () rs orientation: forward

Symbol	Name	Function Class
Rr631042	regulatory region 631042	629 bp distal