rs45981729 SNP Detail

Summary

• ID
  rs45981729
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118996332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG TGATGTGAGC CACCACCTTA
  M
  CCCCATGAAA TCTCACTATG TTACC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147324282	ENSMUSSNP4317630	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320473926	CHEV_2_118991587	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45981729					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118996332 () rs orientation: forward

Symbol	Name	Function Class
Gchfr	GTP cyclohydrolase I feedback regulator	1937 bp upstream
Rr563425	regulatory region 563425	237 bp distal
Rr563426	regulatory region 563426	1432 bp proximal
Rr563427	regulatory region 563427	1764 bp proximal
Rr563428	regulatory region 563428	1933 bp proximal
Tssr19604	transcription start site region 19604	1907 bp upstream
Tssr19605	transcription start site region 19605	1931 bp upstream