rs45981378 SNP Detail

Summary

• ID
  rs45981378
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:112364871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACCAGC AGACATGGAC
  AGGCCACAGT AGACAGGAAG ATGTCCATGG GGTAGCTGTG GCTTTTTGCC CCATGCCCAT
  TGTCCCAAGG CAGATAATAG AGAGACTGTG GGCTGTCATG GGCTGTCTTT CCAGAATAAA
  GAAAAAAGGG GGGAAGGCAG GTGATCAGGA CAGAGATGCT GGTGAAAGGC AGGTGATATA
  S
  AGCCAGGTCT TGCTCTGTGT TGGCTACAGA AGTGGCCCCC GCCATCCCAG TCTCTACTCA
  CTGTCCTCCT CACTCGGGTC CCTGTCCATG GTCGAGGCGT CCAGCCAAGT AACGAGTCTG
  TGCTCCTGAG GACCGAGGTT CCAATCTGAG GGACTACCCT CAGCCCCTCC CAGCCCATTG
  TTACCGATCT GGACATAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60929805	NES16197556	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45981378					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60929805	NES16197556	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112364871 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636339	regulatory region 636339			98 bp proximal
Rr636340	regulatory region 636340			1691 bp proximal
Ssu2	ssu-2 homolog			Intron
				Noncoding-Transcript-Variant
Tssr62400	transcription start site region 62400			103 bp downstream