rs45979217 SNP Detail

Summary

• ID
  rs45979217
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:77195117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG TTTGGCTAGT AACTATTTTA
  A
  AAATATTTTT AGTAAATTTA GTTAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144698319	ENSMUSSNP2619072	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324446871	CHEV_13_77186259	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45979217					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77195117 () rs orientation: forward

Symbol	Name	Function Class
Rr482873	regulatory region 482873	1232 bp distal
Rr482874	regulatory region 482874	1356 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1	Intron
Tssr123272	transcription start site region 123272	407 bp downstream
Tssr123273	transcription start site region 123273	627 bp downstream