rs45979042 SNP Detail

Summary

• ID
  rs45979042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152022937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGCAGA GGCAGATGGA
  TCTCTGTGAG TTCGAGGCTA ATCTGGTCTA CAGAGCAAGT TCCAGGACAA CCAGGGCTAC
  ACAGAGAAAC CTTGTCTCAG GGGAAAGTCA GCGACAGCCG TGGGATCCCT GTGGCTGGAG
  TTGCCAGTTG CTCCGTGGGC ACTCAGAGTG AAACCTGAGT TCTCTGCAAG AGCAGCAGGG
  Y
  CTCCTAACCA CTGAGCTCTC CAGCCCCGCA GCCCCTCACT TCAATCTTAG ATGATTTACA
  GGAAGAAACG ATGGTAAATC ATTCCTTCCT TCCAAATGTC ATTCAAGAAA TCTTCTCAGG
  CCTTTAATCT CACCTCTGAG TTCTAGGTCA TCCTGGTCTG CATAGTGAGC CCAGGCTAGT
  TAGACCTACA GCAAATACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136102272	ENSMUSSNP381010	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321028632	CHEV_3_151980264	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45979042					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152022937 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587524	regulatory region 587524			1072 bp distal
Rr587525	regulatory region 587525			1468 bp distal
Rr587526	regulatory region 587526			1424 bp distal
Rr587527	regulatory region 587527			1005 bp distal
Rr587528	regulatory region 587528			155 bp distal