rs45978992 SNP Detail

Summary

• ID
  rs45978992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83726829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA CCCTCACACA CCCCTCCCCT
  Y
  CCCCAGCCTA TAGGACAGTG TGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133349986	ENSMUSSNP7003262	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321844736	CHEV_6_83699841	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs45978992					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83726829 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6v1b1	ATPase, H+ transporting, lysosomal V1 subunit B1			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Gm66892	predicted gene, 66892			within coordinates
Rr632931	regulatory region 632931			219 bp proximal
Rr632932	regulatory region 632932			634 bp proximal